work/3579467497_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467497_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467497_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467497_sv1	35522090	47538	0.001338	25820717	0.273108	12882654	0.745477	0.252682	0.881266	0.118734	245	356	518	12499141	0.97023	11015068	1484073	19248745	6524434	386.060448	128.233902	9701373	0.979564	0.945418	0.945418	5321182800	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	190838	0.147846	0.0	0.162897	0.219284	0.283733	0.380002	0.887651	1.227175	1.030246	0.902519	0.999508	0.98437	0.950831	1.079363	0.997475	0.864021	0.569661	0.277734	0.3435	0.0	0.0	0.0	277.037245	0.332591	1858.0	70.0	101.0	280.0	459.0	527.0	0.046626	0.998577	6345241	6069619	1.00	0.953374	6366463	0.0027	690	-1022.1631	20.2408	6388832

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