work/3579467498_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467498_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467498_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467498_sv1	36050814	45863	0.001272	27152830	0.246818	13549806	0.755031	0.24328	0.879466	0.120534	218	335	502	13156937	0.971006	11571080	1585857	20501232	6605735	366.044869	133.295593	8897984	0.978741	0.943405	0.943405	5400742650	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	202658	0.147684	0.0	0.142502	0.197443	0.268458	0.367276	0.860127	1.200181	1.017261	0.903185	1.005065	0.997496	0.966969	1.112731	1.03493	0.903558	0.607154	0.298576	0.380005	0.0	0.0	0.0	287.370766	0.324631	1584.0	76.0	110.0	289.0	479.0	549.0	0.033384	0.998681	6345125	6153926	1.00	0.966616	6366463	0.0087	755	-2104.7099	182.6409	6388832

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