work/3579467503_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467503_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467503_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467503_sv1	33137398	44201	0.001334	25105781	0.242373	12526967	0.754322	0.243917	0.877464	0.122536	227	333	490	12180356	0.972331	10687829	1492527	18937846	6123734	364.131467	124.538368	8031617	0.979606	0.945832	0.945832	4963979550	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	199645	0.080322	0.0	0.110265	0.137904	0.234738	0.351518	0.850916	1.197166	0.999718	0.904998	1.005381	1.010569	0.978936	1.11786	1.062915	0.918782	0.62222	0.302006	0.410641	0.0	0.0	0.0	269.797793	0.362003	1412.0	59.0	94.0	266.0	468.0	533.0	0.060096	0.999138	6364328	5983863	1.00	0.939904	6366463	0.0091	679	-1928.2083	155.8566	6388832

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