work/3579467508_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467508_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467508_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467508_sv1	40905336	53882	0.001317	29974113	0.267232	14956148	0.750489	0.247713	0.877125	0.122875	233	340	499	14535860	0.971899	12749767	1786093	22495247	7424984	371.334927	126.191643	10931223	0.979729	0.94607	0.94607	6127718100	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	223620	0.161528	0.0	0.162297	0.223654	0.272506	0.381662	0.887805	1.227002	1.027766	0.901437	0.99333	0.9793	0.949522	1.092311	1.018835	0.90365	0.59775	0.293498	0.386129	0.0	0.0	0.0	321.632513	0.326961	1748.0	84.0	121.0	325.0	534.0	609.0	0.021559	0.99743	6346432	6229210	1.00	0.978441	6366463	0.0075	696	-2020.4476	150.1671	6388832

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