work/3579467509_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467509_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467509_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467509_sv1	34142938	44460	0.001302	26018584	0.237951	12983353	0.755615	0.242676	0.875058	0.124942	225	331	487	12674956	0.976247	11091321	1583635	19660027	6314097	361.789684	123.698982	8124354	0.979852	0.94671	0.94671	5114771700	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	205225	0.08274	0.0	0.103078	0.117905	0.2281	0.358898	0.861694	1.209301	1.002342	0.90442	1.002728	1.003726	0.972634	1.111228	1.045026	0.913818	0.604996	0.308904	0.369787	0.0	0.0	0.0	279.711082	0.36205	1313.0	62.0	98.0	276.0	485.0	552.0	0.052909	0.99904	6365226	6029621	1.00	0.947091	6366463	0.0144	668	-2597.4579	332.1623	6388832

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