work/3579467512_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467512_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467512_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467512_sv1	33452418	38755	0.001159	25251432	0.245154	12602981	0.752774	0.245692	0.878493	0.121507	231	339	499	12271284	0.973681	10780239	1491045	19008610	6204067	370.504049	126.854218	8200986	0.979746	0.945668	0.945668	5012049450	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	200266	0.083153	0.0	0.099504	0.127066	0.230233	0.358341	0.856667	1.199889	0.995656	0.903757	1.005963	1.011674	0.980884	1.120544	1.050033	0.902884	0.608286	0.325272	0.392408	0.0	0.0	0.0	270.243566	0.3649	1407.0	58.0	93.0	266.0	470.0	535.0	0.061766	0.999001	6364209	5973235	1.00	0.938234	6366463	0.0017	723	-951.1409	10.8075	6388832

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