work/3579467513_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467513_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467513_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467513_sv1	30147666	38806	0.001287	22891991	0.240671	11423106	0.762471	0.235834	0.877156	0.122844	210	319	478	11152119	0.976277	9782150	1369969	17454476	5398709	350.119291	127.077866	7255675	0.979789	0.947041	0.947041	4516329000	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	181515	0.06995	0.0	0.100749	0.127693	0.216683	0.358269	0.865516	1.213064	1.000978	0.904708	1.003091	1.002918	0.970853	1.108008	1.041332	0.913638	0.608636	0.323799	0.409261	0.0	0.0	0.0	243.197566	0.355438	1344.0	55.0	87.0	240.0	416.0	476.0	0.075392	0.999132	6363742	5886485	1.00	0.924608	6366463	0.0135	710	-2150.8185	286.0496	6388832

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