work/3579467514_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467514_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467514_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467514_sv1	36549500	57857	0.001583	27618140	0.244363	13776262	0.756831	0.241074	0.874854	0.125146	214	322	483	13392673	0.972156	11716634	1676039	20902262	6658021	354.078717	127.346687	8931360	0.979375	0.945708	0.945708	5473746450	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	205262	0.162025	0.0	0.15257	0.201796	0.262871	0.371836	0.877986	1.215192	1.027423	0.904671	0.9948	0.99036	0.953485	1.092345	1.027988	0.902268	0.601762	0.303175	0.340381	0.0	0.0	0.0	292.858377	0.318436	1567.0	80.0	115.0	296.0	481.0	550.0	0.026681	0.99846	6346376	6196599	1.00	0.973319	6366463	0.0069	594	-1420.5008	83.018	6388832

2 rows