work/3579467518_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467518_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467518_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467518_sv1	33236788	40287	0.001212	25076593	0.245517	12514652	0.752184	0.24621	0.878326	0.121674	234	341	498	12187907	0.973891	10704955	1482952	18862206	6174100	371.276147	124.921204	8160195	0.980112	0.946802	0.946802	4979475150	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	185216	0.196447	0.0	0.172836	0.244251	0.277207	0.384726	0.892126	1.234654	1.031401	0.903811	0.993069	0.976816	0.939225	1.080276	1.017499	0.901353	0.595666	0.273353	0.426895	0.0	0.0	0.0	269.929104	0.327301	1307.0	70.0	102.0	273.0	444.0	506.0	0.046185	0.99851	6344434	6072431	1.00	0.953815	6366463	0.0046	540	-953.4832	41.6063	6388832

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