work/3579467519_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467519_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467519_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467519_sv1	30231608	39292	0.0013	23617216	0.218791	11785288	0.765503	0.232833	0.873832	0.126168	196	307	468	11501694	0.975937	10050549	1451145	18079052	5498872	339.142358	127.969879	6614392	0.979241	0.945872	0.945872	4528847400	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	186131	0.065974	0.0	0.082468	0.125446	0.215718	0.3505	0.843338	1.181854	0.990305	0.904519	1.005469	1.017285	0.992212	1.136839	1.07721	0.951224	0.636832	0.331344	0.430894	0.0	0.0	0.0	247.361229	0.353481	1124.0	57.0	89.0	244.0	427.0	491.0	0.069729	0.999403	6363662	5922539	1.00	0.930271	6366463	0.0037	563	-885.2928	29.4334	6388832

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