work/3579490320_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579490320_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579490320_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579490320_sv1	37713196	51649	0.00137	27652654	0.266764	13796766	0.750574	0.247559	0.870873	0.129127	213	325	490	13391029	0.970592	11661882	1729147	20755355	6845650	357.911888	129.992722	10060542	0.979053	0.94467	0.94467	5649232050	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	220503	0.068308	0.0	0.078785	0.119274	0.223445	0.335633	0.831137	1.173621	0.980886	0.900201	1.011406	1.031651	1.006764	1.145179	1.078885	0.933353	0.633106	0.325916	0.37381	0.0	0.0	0.0	290.453429	0.359123	1606.0	65.0	103.0	287.0	506.0	577.0	0.045474	0.998804	6365207	6076957	1.00	0.954526	6366463	0.01	760	-2263.1267	228.262	6388832

2 rows