work/3579490326_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579490326_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579490326_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579490326_sv1	30239192	36224	0.001198	23625356	0.218717	11791267	0.768613	0.229854	0.880755	0.119245	217	314	458	11527962	0.977669	10153305	1374657	18158751	5430381	343.687067	115.352798	6613836	0.980429	0.948191	0.948191	4530445200	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	177278	0.165891	0.0	0.170586	0.211878	0.242457	0.371127	0.87961	1.215727	1.021684	0.901917	0.995727	0.986095	0.951953	1.103321	1.043507	0.942839	0.626119	0.299587	0.360995	0.0	0.0	0.0	256.100579	0.313476	1817.0	72.0	102.0	259.0	418.0	477.0	0.045192	0.999283	6346344	6078752	1.00	0.954808	6366463	0.013	636	-2000.6711	251.1522	6388832

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