work/3579490360_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579490360_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579490360_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579490360_sv1	27180854	35311	0.001299	20901397	0.231025	10429672	0.773352	0.224959	0.870544	0.129456	200	294	433	10234241	0.981262	8909361	1324880	16164129	4701957	324.163302	112.661392	6279457	0.981507	0.951627	0.951627	4071831450	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	157901	0.1745	0.0	0.148008	0.204669	0.239416	0.36991	0.864828	1.200629	1.019122	0.89858	0.992112	0.982575	0.958388	1.132355	1.08264	1.012533	0.672428	0.348671	0.377796	0.0	0.0	0.0	223.136292	0.315593	1139.0	62.0	90.0	224.0	370.0	425.0	0.073765	0.999333	6344890	5896838	1.00	0.926235	6366463	0.0057	630	-1036.6761	55.3561	6388832

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