work/3579490669_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579490669_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579490669_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579490669_sv1	32538578	39951	0.001228	25217642	0.224992	12585433	0.767345	0.231071	0.874265	0.125735	203	305	454	12322617	0.979117	10773238	1549379	19350627	5827064	335.08858	119.171852	7320936	0.980132	0.947612	0.947612	4874794050	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	191284	0.138215	0.0	0.129393	0.172976	0.231167	0.357405	0.858079	1.207255	1.020843	0.90398	0.998845	0.98951	0.959357	1.114981	1.045462	0.956936	0.630421	0.303597	0.325443	0.0	0.0	0.0	267.965423	0.304834	1522.0	78.0	111.0	271.0	434.0	492.0	0.030934	0.999277	6346926	6169521	1.00	0.969066	6366463	0.0082	528	-1316.188	107.9163	6388832

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