work/3579490671_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579490671_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579490671_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579490671_sv1	32886402	38610	0.001174	24755994	0.247227	12355408	0.761103	0.237337	0.87262	0.12738	207	313	471	12050518	0.975323	10515528	1534990	18841872	5875512	345.820317	125.054016	8130408	0.980273	0.948153	0.948153	4927168800	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	185203	0.125625	0.0	0.151518	0.189729	0.239406	0.364427	0.861264	1.205641	1.021131	0.905331	1.003016	0.994204	0.958655	1.104427	1.038227	0.928313	0.624129	0.304405	0.379753	0.0	0.0	0.0	263.132529	0.317549	1224.0	72.0	104.0	265.0	434.0	495.0	0.041194	0.999077	6344994	6104203	1.00	0.958806	6366463	0.0034	589	-900.4611	27.2652	6388832

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