work/3579491602_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579491602_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579491602_sv1_basic_stats.tsv
Size: 1.2 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579491602_sv1	1138	2	0.001757	1024	0.100176	511	0.779297	0.21875	0.879518	0.120482	181	280	427	498	0.97456	438	60	798	224	314.497992	121.019478	114	0.979043	0.94662	0.94662	170400	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	2	0.0	0.0	0.0	0.0	0.0	0.0	1.002353	1.248349	0.816439	0.871542	1.066138	1.366648	0.883181	0.819701	0.841953	2.051073	0.68113	4.330042	0.0	0.0	0.0	0.0	0.010729	1.853807	2.0	0.0	0.0	0.0	0.0	1.0	1.0	1.0	0	0	0.00	0.0	6347299	0.5	0	0.0	0.0	6388832

2 rows