work/3599837378_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599837378_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599837378_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599837378_sv1	26943184	38493	0.001429	21697260	0.194703	10825372	0.759185	0.239041	0.870165	0.129835	203	309	466	10546436	0.974233	9177142	1369294	16472225	5186542	340.225378	124.285721	5245924	0.978694	0.944171	0.944171	4035703650	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	165159	0.160911	0.0	0.15683	0.191048	0.258324	0.358161	0.825332	1.166652	0.99931	0.904153	1.010059	1.020555	0.990644	1.148356	1.070519	0.954093	0.644743	0.33598	0.35447	0.0	0.0	0.0	227.242307	0.317226	1042.0	63.0	91.0	227.0	380.0	437.0	0.071008	0.999629	6346211	5914391	1.00	0.928992	6366463	0.0111	625	-1550.8991	160.8995	6388832

2 rows