work/3599837386_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599837386_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599837386_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599837386_sv1	25664836	40984	0.001597	20291300	0.209373	10120693	0.719673	0.278307	0.878778	0.121222	256	380	555	9585134	0.947083	8423204	1161930	14603110	5647206	409.199094	138.146332	5373536	0.9735	0.928984	0.928984	3843577800	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	150390	0.141288	0.0	0.137132	0.190698	0.300281	0.351125	0.801936	1.122689	0.976542	0.898865	1.024115	1.068776	1.046239	1.160889	1.060752	0.844559	0.60037	0.283424	0.313446	0.0	0.0	0.0	208.973942	0.341888	965.0	50.0	74.0	209.0	360.0	418.0	0.11658	0.999852	6344911	5624262	1.00	0.88342	6366463	0.0127	630	-1541.2955	196.8579	6388832

2 rows