work/3599837402_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599837402_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599837402_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599837402_sv1	29041992	58790	0.002024	23257345	0.199182	11593901	0.749539	0.247933	0.878543	0.121457	230	336	494	11223038	0.968012	9859925	1363113	17432293	5766262	366.948441	124.978889	5784647	0.975674	0.936643	0.936643	4347480300	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	175730	0.193965	0.0	0.175748	0.220756	0.287348	0.373436	0.842534	1.17669	1.005129	0.9007	1.004	1.010797	0.987066	1.135927	1.069857	0.93966	0.64151	0.331594	0.362212	0.0	0.0	0.0	248.111777	0.325599	1170.0	66.0	95.0	249.0	417.0	480.0	0.059279	0.999373	6346126	5989066	1.00	0.940721	6366463	0.0107	627	-1631.3422	166.4971	6388832

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