work/3599837410_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599837410_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599837410_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599837410_sv1	33216208	60287	0.001815	25938269	0.219108	12933754	0.755962	0.241714	0.877962	0.122038	212	322	483	12506918	0.966998	10980603	1526315	19608345	6269637	352.937785	127.692093	7277939	0.975886	0.937761	0.937761	4973388150	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	195388	0.164048	0.0	0.146706	0.206376	0.260569	0.362169	0.834709	1.170809	0.999311	0.898771	1.005197	1.019108	0.994788	1.150006	1.069763	0.934441	0.636874	0.314302	0.350593	0.0	0.0	0.0	273.262691	0.319628	1309.0	75.0	108.0	273.0	459.0	529.0	0.035033	0.998963	6346391	6143425	1.00	0.964967	6366463	0.0163	632	-2341.4237	368.7817	6388832

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