work/3599837417_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599837417_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599837417_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599837417_sv1	34670700	52315	0.001509	26555505	0.234065	13247646	0.756715	0.241315	0.882503	0.117497	232	332	483	12849406	0.969939	11339638	1509768	20094960	6408230	362.105244	119.586052	8115195	0.978724	0.943717	0.943717	5192757750	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	199800	0.180375	0.0	0.175843	0.207498	0.269696	0.361213	0.845723	1.187045	1.007687	0.90195	1.009111	1.014491	0.979972	1.125367	1.034425	0.899647	0.603219	0.292769	0.255607	0.0	0.0	0.0	287.41848	0.323329	1375.0	77.0	110.0	289.0	480.0	549.0	0.033062	0.998734	6346316	6155977	1.00	0.966938	6366463	0.0132	632	-2109.2613	277.0413	6388832

2 rows