work/3599837425_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599837425_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599837425_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599837425_sv1	36918212	62641	0.001697	28681137	0.223117	14305263	0.765024	0.232792	0.881149	0.118851	211	315	470	13912932	0.972574	12259360	1653572	21941761	6676735	346.106298	122.392349	8237075	0.979197	0.94526	0.94526	5528335650	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	217491	0.136509	0.0	0.138221	0.186445	0.24012	0.35233	0.839034	1.179533	1.003204	0.901173	1.009538	1.016264	0.986705	1.138924	1.049419	0.919163	0.604138	0.299916	0.299549	0.0	0.0	0.0	306.965538	0.317084	1378.0	85.0	122.0	308.0	512.0	587.0	0.020501	0.998436	6346434	6235943	1.00	0.979499	6366463	0.0192	633	-2957.7798	544.5304	6388832

2 rows