work/3599837433_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599837433_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599837433_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599837433_sv1	39572816	55987	0.001415	29501772	0.254494	14719017	0.756886	0.241216	0.878336	0.121664	226	331	487	14329290	0.973522	12585933	1743357	22329471	7116314	361.99811	124.207016	10071044	0.979571	0.945825	0.945825	5927524350	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	225609	0.174603	0.0	0.175001	0.216732	0.256975	0.371515	0.859454	1.197215	1.008827	0.894764	0.998969	0.99772	0.973939	1.136774	1.059052	0.947309	0.637029	0.322957	0.39773	0.0	0.0	0.0	317.162278	0.327474	1530.0	84.0	120.0	319.0	536.0	619.0	0.022097	0.997795	6346452	6225781	1.00	0.977903	6366463	0.0148	631	-2551.4634	371.4212	6388832

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