work/3599837434_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599837434_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599837434_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599837434_sv1	35890118	59443	0.001656	29139952	0.188079	14535093	0.751676	0.246284	0.866322	0.133678	208	314	472	14122446	0.97161	12234588	1887858	21903799	7176710	345.569124	124.544907	6750166	0.976437	0.939217	0.939217	5374601250	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	221479	0.156033	0.0	0.17504	0.205914	0.260591	0.362791	0.828355	1.165918	0.998761	0.902924	1.010087	1.018717	0.992485	1.150157	1.067652	0.958334	0.644913	0.317371	0.330631	0.0	0.0	0.0	304.858006	0.315147	1387.0	86.0	122.0	305.0	508.0	582.0	0.019935	0.998483	6346431	6239548	1.00	0.980065	6366463	0.0131	627	-2282.4221	292.4288	6388832

2 rows