work/3599837441_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599837441_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599837441_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599837441_sv1	39499034	56663	0.001435	30038992	0.239501	14987134	0.757613	0.240501	0.877509	0.122491	217	326	485	14551723	0.970948	12769273	1782450	22757920	7224409	356.490398	126.144638	9460042	0.978899	0.943721	0.943721	5916355650	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	229057	0.138362	0.0	0.145916	0.17653	0.252561	0.355086	0.831837	1.170915	1.000212	0.899133	1.007502	1.014554	0.992552	1.151716	1.080294	0.950195	0.633537	0.3066	0.359422	0.0	0.0	0.0	320.407278	0.325376	1497.0	86.0	123.0	321.0	543.0	626.0	0.019932	0.99749	6346428	6239565	1.00	0.980068	6366463	0.0147	631	-2600.9442	368.4325	6388832

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