work/3599837449_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599837449_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599837449_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599837449_sv1	34914640	52842	0.001513	27069960	0.224682	13504151	0.749881	0.248167	0.878209	0.121791	236	338	491	13152348	0.973949	11550514	1601834	20299241	6717877	369.002029	121.405655	7844680	0.97842	0.943166	0.943166	5229269700	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	206361	0.165979	0.0	0.175983	0.212537	0.26046	0.367246	0.841372	1.176566	0.998638	0.896403	1.003862	1.012992	0.991657	1.149738	1.074576	0.951376	0.637489	0.330918	0.356513	0.0	0.0	0.0	290.502608	0.324963	1398.0	78.0	112.0	291.0	492.0	565.0	0.030138	0.998609	6346409	6174593	1.00	0.969862	6366463	0.013	633	-2202.6162	276.817	6388832

2 rows