work/3599837457_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599837457_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599837457_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599837457_sv1	30168302	49371	0.001637	23800726	0.211068	11871269	0.759316	0.238609	0.876804	0.123196	212	317	473	11561774	0.973929	10137405	1424369	18072279	5679076	348.374207	124.296509	6367576	0.978257	0.943519	0.943519	4517839650	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	180387	0.180654	0.0	0.166516	0.213804	0.257261	0.365438	0.837232	1.175773	1.004974	0.903402	1.010154	1.010633	0.983175	1.138804	1.062845	0.941465	0.627562	0.313283	0.274385	0.0	0.0	0.0	252.111187	0.315813	1175.0	72.0	102.0	252.0	421.0	484.0	0.04559	0.999181	6346282	6076216	1.00	0.95441	6366463	0.0101	629	-1622.7366	155.8925	6388832

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