work/3599843889_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843889_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843889_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843889_sv1	36554648	72416	0.001981	29956954	0.180489	14937432	0.770014	0.227569	0.87466	0.12534	203	299	443	14573266	0.975621	12746652	1826614	23067261	6817277	328.716436	114.2761	6597694	0.978818	0.945116	0.945116	5472334800	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	223022	0.198497	0.0	0.17886	0.21173	0.262475	0.372229	0.86753	1.204835	1.019305	0.905482	1.000142	0.991629	0.956672	1.106439	1.04773	0.94976	0.633865	0.306496	0.343207	0.0	0.0	0.0	321.079302	0.310165	1534.0	92.0	131.0	324.0	523.0	594.0	0.013983	0.998244	6345870	6277438	1.00	0.986017	6366463	0.0142	511	-2267.0666	304.0528	6388832

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