work/3599843890_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843890_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843890_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843890_sv1	40388186	59630	0.001476	32627454	0.192154	16279271	0.770125	0.228047	0.880377	0.119623	209	308	455	15855637	0.973977	13958940	1896697	25127223	7440601	337.586314	116.753372	7760732	0.978641	0.944228	0.944228	6049283400	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	242491	0.163371	0.0	0.166074	0.220799	0.259973	0.377521	0.880514	1.208218	1.021025	0.905158	1.001246	0.991674	0.952464	1.098611	1.03153	0.929121	0.618211	0.308755	0.333693	0.0	0.0	0.0	352.118791	0.311716	1652.0	100.0	143.0	356.0	572.0	650.0	0.00964	0.99595	6346703	6305090	1.00	0.99036	6366463	0.0003	530	-682.2577	0.3023	6388832

2 rows