work/3599843892_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843892_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843892_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843892_sv1	38541844	57811	0.0015	31556190	0.181249	15744717	0.768615	0.229553	0.873391	0.126609	201	300	447	15359344	0.975524	13414706	1944638	24254564	7243815	329.632926	116.486221	6985654	0.978506	0.944077	0.944077	5772604950	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	232541	0.159716	0.0	0.159309	0.197823	0.259013	0.36477	0.863448	1.206021	1.025797	0.907669	0.999635	0.991137	0.954669	1.101595	1.034194	0.93471	0.63731	0.308052	0.370638	0.0	0.0	0.0	336.577456	0.306972	1628.0	97.0	139.0	340.0	544.0	615.0	0.01114	0.997944	6346549	6295541	1.00	0.98886	6366463	0.0093	664	-2165.7161	187.8998	6388832

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