work/3599843894_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843894_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843894_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843894_sv1	30028100	44516	0.001482	24942951	0.169346	12444945	0.7699	0.228316	0.876918	0.123082	208	304	450	12149476	0.976258	10654094	1495382	19203571	5694864	334.418936	115.668877	5085149	0.978713	0.944333	0.944333	4497537600	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	184803	0.185936	0.0	0.172988	0.216414	0.259691	0.376063	0.874045	1.209461	1.020039	0.904737	0.996556	0.984659	0.954312	1.110251	1.04592	0.958907	0.636458	0.308241	0.337689	0.0	0.0	0.0	267.660375	0.311518	1229.0	75.0	108.0	271.0	437.0	494.0	0.034867	0.999496	6345377	6144485	1.00	0.965133	6366463	0.009	743	-1926.2698	174.0099	6388832

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