work/3599843897_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843897_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843897_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843897_sv1	40675120	61608	0.001515	32432273	0.202651	16180633	0.759717	0.238384	0.87578	0.12422	221	319	467	15752240	0.973524	13795490	1956750	24639338	7731327	349.088623	117.246315	8242847	0.978789	0.944172	0.944172	6092026800	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	239853	0.176313	0.0	0.178238	0.214513	0.280415	0.390673	0.89781	1.222614	1.02304	0.902861	0.993755	0.98532	0.945873	1.088159	1.026868	0.917953	0.61504	0.305	0.344926	0.0	0.0	0.0	349.649796	0.315628	2004.0	98.0	139.0	355.0	567.0	642.0	0.010906	0.996704	6346916	6297028	1.00	0.989094	6366463	0.0038	602	-1248.392	42.6448	6388832

2 rows