work/3599843899_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843899_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843899_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843899_sv1	28133242	40452	0.001438	22364907	0.205036	11157997	0.745685	0.252506	0.875286	0.124714	217	336	504	10747663	0.963225	9407283	1340380	16677186	5647269	365.603456	132.903107	5768335	0.976302	0.937615	0.937615	4213918500	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	165413	0.113702	0.0	0.128053	0.18189	0.2673	0.351109	0.830454	1.166775	1.007484	0.910106	1.016315	1.029728	0.994207	1.118385	1.026181	0.861504	0.587948	0.275504	0.359874	0.0	0.0	0.0	232.474844	0.321826	1013.0	62.0	90.0	234.0	386.0	441.0	0.071199	0.999745	6345461	5913177	1.00	0.928801	6366463	0.0116	585	-1583.5406	175.8374	6388832

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