work/3599843901_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843901_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843901_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843901_sv1	37868648	63511	0.001677	31104512	0.178621	15515817	0.76471	0.233248	0.876985	0.123015	213	312	459	15103188	0.973406	13245266	1857922	23785938	7255063	341.156348	117.18428	6764136	0.977979	0.94205	0.94205	5670770550	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	231671	0.167072	0.0	0.165828	0.213663	0.264161	0.361833	0.859472	1.198047	1.018971	0.906272	1.004866	0.998228	0.960617	1.1057	1.048271	0.937388	0.631841	0.311638	0.364821	0.0	0.0	0.0	334.243083	0.312473	1502.0	94.0	134.0	338.0	546.0	616.0	0.012863	0.998281	6346850	6284574	1.00	0.987137	6366463	0.0157	627	-2719.5066	419.1315	6388832

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