work/3599843904_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843904_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843904_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843904_sv1	32632176	50107	0.001536	26673808	0.182592	13307433	0.759685	0.238437	0.869709	0.130291	213	311	458	12977855	0.975234	11286961	1690894	20263691	6360010	340.760451	116.722755	5958368	0.978678	0.94426	0.94426	4887310350	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	198697	0.146258	0.0	0.135603	0.186566	0.248843	0.360148	0.854332	1.198363	1.021157	0.909022	1.010274	0.996737	0.958709	1.103006	1.037941	0.923739	0.611149	0.307321	0.346756	0.0	0.0	0.0	285.004688	0.315202	1759.0	79.0	113.0	287.0	467.0	531.0	0.028526	0.999043	6344939	6184852	1.00	0.971474	6366463	0.0004	602	-571.8479	0.6764	6388832

2 rows