work/3599843905_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843905_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843905_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843905_sv1	33491726	49513	0.001478	27316381	0.184384	13629062	0.756867	0.24132	0.875632	0.124368	232	326	468	13278310	0.974264	11626909	1651401	20674879	6591989	354.78723	113.214462	6175345	0.979029	0.944523	0.944523	5016331950	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	202118	0.150894	0.0	0.148074	0.217103	0.263308	0.378929	0.887604	1.226869	1.030359	0.905997	0.992917	0.980037	0.942377	1.083052	1.026351	0.920592	0.610443	0.306489	0.338454	0.0	0.0	0.0	297.164879	0.320408	1390.0	81.0	115.0	301.0	484.0	549.0	0.026585	0.998662	6345972	6197210	1.00	0.973415	6366463	0.0158	684	-2814.1474	416.8359	6388832

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