work/3599843906_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843906_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843906_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843906_sv1	35272074	55858	0.001584	28591364	0.189405	14263315	0.766773	0.231273	0.877344	0.122656	210	309	458	13899482	0.974492	12194626	1704856	21923088	6612418	339.326142	117.720421	6680710	0.978408	0.943783	0.943783	5282432400	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	226868	0.073368	0.0	0.0935	0.109295	0.213323	0.344856	0.840639	1.181744	0.986361	0.903712	1.013231	1.027241	0.991224	1.132622	1.067245	0.924575	0.629389	0.336675	0.36684	0.0	0.0	0.0	307.66813	0.355221	2153.0	70.0	111.0	304.0	529.0	603.0	0.035854	0.997858	6365106	6138200	1.00	0.964146	6366463	0.0059	661	-1684.7785	89.9587	6388832

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