work/3599843907_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843907_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843907_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843907_sv1	37739124	55007	0.001458	31042809	0.177437	15489471	0.762417	0.235811	0.872217	0.127783	213	312	461	15145207	0.977774	13209910	1935297	23667569	7320233	342.33492	117.833336	6696315	0.979039	0.94517	0.94517	5652617550	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	230505	0.168687	0.0	0.174966	0.216888	0.263954	0.372833	0.863826	1.208731	1.021401	0.905599	1.000427	0.98696	0.957202	1.105003	1.042837	0.944576	0.635693	0.291569	0.38844	0.0	0.0	0.0	332.875593	0.313972	1460.0	93.0	133.0	336.0	543.0	615.0	0.013537	0.997323	6344928	6280283	1.00	0.986463	6366463	0.0137	645	-2568.5149	336.3383	6388832

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