work/3599843909_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843909_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843909_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843909_sv1	30120268	54985	0.001826	24757604	0.178042	12346552	0.758008	0.239771	0.874131	0.125869	224	320	465	12028301	0.974223	10514315	1513986	18766456	5936163	349.527241	115.655243	5362664	0.978275	0.943334	0.943334	4509792450	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	183824	0.180942	0.0	0.180422	0.225578	0.272708	0.377111	0.875514	1.207469	1.025128	0.907888	1.001386	0.992719	0.952328	1.091237	1.028826	0.914046	0.607767	0.309146	0.355645	0.0	0.0	0.0	266.965276	0.319114	1326.0	73.0	105.0	270.0	436.0	495.0	0.040619	0.999243	6346778	6107866	1.00	0.959381	6366463	0.0153	695	-2523.125	362.1933	6388832

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