work/3599843916_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843916_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843916_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843916_sv1	33042466	48308	0.001462	26910914	0.185566	13426965	0.756884	0.241321	0.875031	0.124969	232	328	471	13126194	0.9776	11485824	1640370	20368447	6494159	356.620193	114.471619	6131552	0.979755	0.94617	0.94617	4949123700	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	200311	0.164412	0.0	0.145239	0.202649	0.254334	0.371326	0.878314	1.219342	1.029138	0.904117	0.997437	0.982634	0.947538	1.093201	1.031043	0.919915	0.607842	0.301982	0.377717	0.0	0.0	0.0	292.268457	0.320792	2028.0	79.0	113.0	296.0	477.0	540.0	0.028852	0.998497	6346152	6182776	1.00	0.971148	6366463	0.0073	524	-1409.7345	92.6546	6388832

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