work/3599843917_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843917_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843917_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843917_sv1	35560018	50217	0.001412	29248285	0.177495	14594774	0.772271	0.226012	0.876489	0.123511	202	301	449	14284104	0.978714	12519858	1764246	22587608	6610460	331.049271	117.53846	6311733	0.978991	0.945592	0.945592	5326470150	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	217926	0.183837	0.0	0.171934	0.204422	0.261111	0.381604	0.878466	1.210611	1.024258	0.906745	0.997512	0.986158	0.946574	1.102599	1.041086	0.940582	0.620726	0.308474	0.356212	0.0	0.0	0.0	313.0798	0.310364	1526.0	88.0	128.0	317.0	508.0	578.0	0.016692	0.998356	6344830	6260196	1.00	0.983308	6366463	0.0097	614	-1912.4079	180.7452	6388832

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