work/3599843921_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843921_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843921_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843921_sv1	32533314	43694	0.001343	26141283	0.196476	13044658	0.76131	0.237019	0.877208	0.122792	222	320	463	12688799	0.97272	11130711	1558088	19901607	6195982	347.899935	114.708664	6392031	0.979317	0.945765	0.945765	4873443000	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	193593	0.174808	0.0	0.174328	0.215	0.270452	0.377559	0.877594	1.213522	1.023883	0.908065	1.001732	0.991888	0.950501	1.08538	1.026279	0.909483	0.609119	0.297612	0.328485	0.0	0.0	0.0	283.220002	0.318488	1652.0	78.0	111.0	286.0	464.0	524.0	0.03126	0.999026	6345491	6167445	1.00	0.96874	6366463	0.012	688	-2239.1851	253.1605	6388832

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