work/3599843925_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843925_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843925_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843925_sv1	37603418	52695	0.001401	30497972	0.188957	15218374	0.767206	0.231067	0.876583	0.123417	207	308	458	14843272	0.975352	13011358	1831914	23398215	7047062	338.035905	119.13147	7105446	0.9789	0.944696	0.944696	5632608450	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	227483	0.155569	0.0	0.14846	0.206782	0.241733	0.359439	0.849675	1.194418	1.017358	0.908051	1.005264	0.998904	0.963582	1.11466	1.051069	0.942799	0.637746	0.305881	0.34794	0.0	0.0	0.0	326.012503	0.311959	1901.0	92.0	132.0	329.0	533.0	604.0	0.013975	0.998266	6347159	6277493	1.00	0.986025	6366463	0.0135	685	-2719.1939	363.4286	6388832

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