work/3599843928_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843928_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843928_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843928_sv1	33686508	50909	0.001511	27585965	0.181098	13763060	0.764937	0.233218	0.872972	0.127028	209	306	453	13423820	0.975351	11718613	1705207	21101521	6433535	335.921675	116.118927	6100543	0.978625	0.944161	0.944161	5045339850	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	203886	0.15642	0.0	0.147109	0.200538	0.256746	0.36343	0.859565	1.198957	1.019581	0.908641	1.004374	0.996458	0.958852	1.107785	1.038598	0.940044	0.624465	0.284375	0.391049	0.0	0.0	0.0	294.582637	0.31299	1867.0	82.0	119.0	297.0	481.0	545.0	0.023218	0.998848	6345538	6218648	1.00	0.976782	6366463	0.0077	675	-1766.3731	145.9753	6388832

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