work/3599843929_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843929_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843929_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843929_sv1	40178330	63478	0.00158	32430771	0.192829	16178872	0.76335	0.234693	0.873852	0.126148	208	310	460	15767571	0.974578	13778523	1989048	24756026	7611267	339.608805	119.069519	7747559	0.978427	0.943667	0.943667	6017227800	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	240965	0.131275	0.0	0.133247	0.197232	0.257862	0.368076	0.871694	1.209267	1.020169	0.903571	0.998432	0.992388	0.954964	1.107316	1.038744	0.934184	0.63582	0.298369	0.309069	0.0	0.0	0.0	345.818894	0.309346	1671.0	99.0	141.0	350.0	562.0	636.0	0.010205	0.99736	6347106	6301495	1.00	0.989795	6366463	0.0106	651	-2433.1632	245.5485	6388832

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