work/3599843931_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843931_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843931_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843931_sv1	38620898	56821	0.001471	31154877	0.193316	15544461	0.763746	0.23443	0.873127	0.126873	209	309	459	15167586	0.975755	13243231	1924355	23794411	7303645	339.193272	118.887985	7466021	0.978558	0.944221	0.944221	5784611550	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	232709	0.170826	0.0	0.169191	0.199433	0.253349	0.371881	0.86983	1.205406	1.016657	0.905333	1.001582	0.994346	0.960837	1.104453	1.038459	0.933054	0.620449	0.285137	0.322035	0.0	0.0	0.0	332.89965	0.313261	2074.0	93.0	134.0	336.0	544.0	616.0	0.01325	0.998002	6346675	6282108	1.00	0.98675	6366463	0.0102	711	-2538.9946	242.1223	6388832

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