work/3599843935_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843935_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843935_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843935_sv1	36269032	57528	0.001586	28354580	0.218215	14143601	0.754464	0.243507	0.874317	0.125683	216	324	482	13743180	0.971689	12015895	1727285	21392509	6904543	354.905045	125.01178	7914452	0.977068	0.940266	0.940266	5431725600	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	209460	0.161417	0.0	0.184292	0.208228	0.270982	0.386736	0.885809	1.221516	1.023621	0.904223	0.990554	0.983274	0.951027	1.095107	1.034647	0.923304	0.61467	0.304214	0.296938	0.0	0.0	0.0	300.243676	0.314463	1600.0	84.0	120.0	304.0	490.0	556.0	0.021654	0.998597	6346312	6228601	1.00	0.978346	6366463	0.0064	584	-1356.0358	89.0606	6388832

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