work/3599843938_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843938_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843938_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843938_sv1	35378106	63792	0.001803	27015778	0.23637	13470742	0.744915	0.252724	0.876664	0.123336	238	344	498	13037157	0.967813	11429210	1607947	20124457	6827529	372.903448	122.432266	8362328	0.976867	0.939463	0.939463	5297147100	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	200205	0.198464	0.0	0.186946	0.248352	0.28983	0.383103	0.872994	1.211022	1.026192	0.904925	0.99977	0.990594	0.955745	1.09248	1.027137	0.896484	0.597601	0.298202	0.384524	0.0	0.0	0.0	288.564655	0.324469	1308.0	77.0	110.0	292.0	476.0	543.0	0.032374	0.999156	6346923	6160357	1.00	0.967626	6366463	0.0061	661	-1398.6378	75.0906	6388832

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