work/3599843947_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843947_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843947_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843947_sv1	29852170	49351	0.001653	23725396	0.205237	11833188	0.761424	0.236495	0.876696	0.123304	212	316	470	11515379	0.973143	10095482	1419897	18065096	5610949	346.513222	121.703133	6126774	0.977374	0.941225	0.941225	4470422850	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	175990	0.159606	0.0	0.161161	0.206803	0.264629	0.37501	0.865808	1.201113	1.023449	0.907068	0.999961	0.994346	0.95989	1.102635	1.034994	0.925673	0.612946	0.319953	0.366887	0.0	0.0	0.0	252.339779	0.315796	1236.0	70.0	101.0	254.0	415.0	472.0	0.046656	0.999458	6344822	6069432	1.00	0.953344	6366463	0.0017	584	-622.5268	7.0459	6388832

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