work/3599843950_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599843950_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843950_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599843950_sv1	34900514	60530	0.001734	27636204	0.208143	13782641	0.758847	0.238963	0.878901	0.121099	222	325	477	13406965	0.972743	11783396	1623569	20971642	6604032	354.737439	120.508827	7264310	0.976871	0.939931	0.939931	5225997600	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	204839	0.168986	0.0	0.151953	0.216948	0.265956	0.377022	0.869334	1.213328	1.02505	0.906112	1.001043	0.986342	0.954184	1.094629	1.030806	0.919883	0.612205	0.306212	0.383693	0.0	0.0	0.0	297.381204	0.31687	1260.0	82.0	118.0	300.0	486.0	553.0	0.023654	0.998468	6344969	6215868	1.00	0.976346	6366463	0.0074	656	-1558.7642	104.3505	6388832

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